Understanding Flow Cytometers


Flow cytometers are essential instruments in biological research, clinical diagnostics, and biotech laboratories. They allow scientists to analyze individual cells or particles based on physical and chemical properties, supporting high-throughput, multiparameter cell analysis.


From immunology and oncology to cell therapy and pharmaceutical research, flow cytometers enable rapid, reliable data collection critical for modern life science and medical workflows.

Flow Cytometers: What They Are and How They’re Used in Modern Laboratories



How Flow Cytometry Works


Flow cytometry analyzes individual cells or particles as they flow through a laser beam. Cells are often labeled with fluorescent antibodies to detect specific markers.


As cells pass through the laser:

  • Forward scatter (FSC): indicates cell size
  • Side scatter (SSC): measures internal complexity
  • Fluorescence detectors: quantify protein expression and cellular markers


This allows high-throughput, multiparameter analysis of thousands of cells per second for:

  • Clinical diagnostics like immunophenotyping
  • Biotech and pharmaceutical research such as drug discovery
  • Academic research in cell biology and immunology


Modern flow cytometers often include automation and data analysis software, ensuring efficient, reproducible, and regulatory-compliant results.


Common Applications of Flow Cytometers


Flow cytometers are used across clinical, biotech, and research laboratories to provide rapid, multiparameter cell analysis. Common applications include:

  • Clinical laboratories: immunophenotyping, leukemia/lymphoma analysis, transplant monitoring
  • Biotech and pharmaceutical research: drug discovery, cell signaling studies, assay development
  • Academic research: basic immunology, cell biology, and functional studies


These instruments are also critical for quality control, regulatory compliance, and reproducible data collection, supporting FDA, GMP, and ISO standards.



Types of Flow Cytometers


Flow cytometers come in various configurations:

  • Basic systems for cell counting and viability
  • Multicolor flow cytometers for complex experiments
  • High-throughput instruments for screening applications
  • Imaging flow cytometers that combine microscopy with traditional flow analysis



Common Flow Cytometer Brands and Models Used in Laboratories


Leading manufacturers provide flow cytometers for clinical, research, and biotech labs, with system choice based on throughput, detection complexity, and application needs.

  • BD Biosciences: FACSVerse, FACSMicroCount, Accuri C6 – widely used for clinical flow cytometry, immunophenotyping, and pharmaceutical research
  • Beckman Coulter: CytoFLEX, Gallios, Navios – common in hospital labs and diagnostic settings, supporting hematology and immune profiling
  • Sony Biotechnology: SA3800, MA900 – selected for advanced multicolor analysis and high-resolution cell characterization
  • Amnis: ImageStream X Mark II – used in biotech and academic labs for routine cell analysis and assay development
  • Thermo Fisher Scientific: Attune NxT – supports high-throughput workflows in drug discovery and life science research
  • Other specialized brands: Intellicyt iQue, Stratedigm, Cytek Biosciences – spectral flow cytometry, automation, and advanced research applications


Flow Cytometers: What They Are and How They’re Used in Modern Laboratories Flow Cytometers: What They Are and How They’re Used in Modern Laboratories null



Why Flow Cytometers Are Critical in Labs


Flow cytometers provide speed, precision, and reproducibility, enabling laboratories to analyze large populations of cells quickly and consistently. They are essential for:

  • Time-sensitive clinical diagnostics
  • High-throughput drug discovery and screening
  • Research requiring multiparameter cell analysis
  • Maintaining data quality and reproducibility


Modern flow cytometers also integrate automation, data management, and regulatory compliance, making them indispensable in regulated medical and biotech environments.



Ready to Monitor Your Cell Populations?


Flow cytometry is essential for accurate, high-throughput cell analysis in medical and research labs. Explore our resources and learn how to select or integrate flow cytometers that meet your laboratory’s workflow, throughput, and compliance requirements. Visit our website to get started.



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